Very sad to see Juan Le Ger close. I only went once but they had a great selection.
i havent been to Captains Vinyl in midcity but ive heard good things.
Disko Obscura, around the corner (literally) from Jim Russells is also worth checking out if youre into funk/dance etc. The owner has some of the best taste in the genre.
I havent been to Bryan Funks new spot but I used to get some gems (OG Thou, Cursed, etc) at Iron Rail when he ran the selection. Now its a pizza place :/